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lundi, octobre 4 2010

ScienceBlogging – Join if you have original thoughts, insight, talent, and dedication to work

ScienceBlogging – Join if you have original thoughts, insight, talent, and dedication to work

If you have original thoughts, insight, talent, and dedication to work then you will be best fit into the elite group of Science Bloggers.

ScienceBlogging is an experiment in science communication, and aimed to enable discussions and dialogues in much digital form. Here you will have freedom to write anything you want and show your creative instincts. We do not edit your work and we do not tell you what to write about. We only sensor adult and other prohibited content.

Come join this community! Send email to blogs at thesciencejobs . com along with your first blog writing in not less than 250 words. Selection will be based on merit.

Read more: http://www.thesciencejobs.com/jobs/biology/ecology/19102?utm_source=feedburner&utm_medium=feed&utm_campaign=Feed%3A+thesciencejobs%2Fnew+%28Jobs+and+Fellowships+in+all+branches+of+Science%29#ixzz11N7MO39F

dimanche, septembre 26 2010

« LA BIODIVERSITÉ C’EST MA NATURE »… LA MOBILISATION CONTINUE !

A quatre semaines de la Conférence sur la Biodiversité de Nagoya au Japon du 18 au 29 octobre, le collectif « La biodiversité c’est ma nature » se mobilise plus que jamais.

Pendant cette année internationale pour la biodiversité, les six ONG (Comité Français de l’UICN, FNH, FNE, Ligue ROC, LPO et WWF‐France) organisatrices de « la biodiversité c’est ma nature » ont souhaité toucher le plus large public possible à travers cette campagne de sensibilisation résolument créative et participative (1).

Les citoyens ont été nombreux à répondre à l’Appel et à créer leur portrait biodiversité :

• À ce jour l'Appel a rassemblé plus de 20 000 signataires .

• De nombreuses personnalités (2) relayent la campagne : Claire Keim, Alain Bernard, Maud Fontenoy, Bixente Lizarazu, Pascal Obispo, ...

• La mobilisation, sur le web comme sur le terrain, a été très importante comme en témoignent les opérations menées avec la Fête de la Nature , le Festival des Petits Débrouillards ou les Eurockéennes de Belfort . Lors de ce dernier festival, l’opération a rencontré un joli succès, plus de 700 signatures de l’Appel Citoyen et autant de portraits biodiversité ont été réalisés en 3 jours (3) !

• Cet été, un concours a été organisé avec Terre Sauvage où les internautes ont rivalisé d’audace et

d’imagination pour réaliser leur plus beau portrait biodiversité. Les cinq portraits gagnants seront publiés dans le magazine Terre Sauvage du mois d’octobre (4). Vous les trouverez en page 2.

• À l’échelle internationale, l’Organisation des Nations Unies et leur centre régional d’information (UNRIC) sont partenaires de l’opération et lui apportent ainsi reconnaissance et visibilité internationale. L’Appel Citoyen est disponible en français, anglais et espagnol.

La mobilisation continue ! Retrouvez le stand « La biodiversité c’est ma nature » pour la Fête de la Science du 21 au 24 octobre au Muséum national d’Histoire naturelle (5). Et rejoignez la campagne jusqu’en décembre dans toute la France sur l’exposition itinérante « Biodiversité, nos vies sont liées » de Noé Conservation (6).

Toutes les informations et actualités sur « La biodiversité c’est ma nature » sur le site Internet de la campagne :

http://www.LaBiodiversiteCestmaNature.org/

Contact > Magali Evanno, Comité Français de l’UICN | magali.evannoauicn.fr ‐ 01 43 31 02 79

1 Présentation de la campagne : http://www.labiodiversitecestmanature.org/docs/LaBiodiversiteCestMaNature_presentation‐campagne.pdf

2 Tous les relais de la campagne : http://www.labiodiversitecestmanature.org/relais.php

3 Tous les portraits réalisés avec les Festivaliers des Eurockéennes de Belfort sont consultables sur la page Facebook de la campagne :

http://www.facebook.com/LaBiodiversiteCestmaNature?v=photos&ref=ts

4 Retrouvez les portraits de tous les participants : http://www.facebook.com/LaBiodiversiteCestmaNature?v=photos&ref=ts

5 Le programme du Muséum National d’Histoire Naturel pour la Fête de la Science :

http://www.mnhn.fr/museum/foffice/tous/tous/guidePratique/calendrier/calniv2/ficheExpo.xsp?AE_ID=2975&LIEU_ID=158&MAN_ID=10200&SI

TE_ID=10&TYPEEVT_ID=11&idx=52&nav=liste

6 Les dates et lieux de l’exposition « Biodiversité, nos vies sont liées » : http://www.agisavecnoe.org/Front/index.php?goto=cms_expo

ZOOM SUR LA BIODIVERSITÉ : « DES CLICHÉS CONTRE LES IDÉES REÇUES »

Naturel brut , ça continue ! Le parcours artistique du WWF profite de la fête des jardins qui se déroulera les samedi 26 et dimanche 27 septembre dans tous les parcs de la capitale, pour lever le voile sur l’une de ses dernières installations : l’exposition photo des étudiants de GOBELINS , l’école de l’image. Rendez-vous dès samedi prochain et jusqu’au 31 octobre dans le Parc des Buttes-Chaumont pour tordre le cou aux idées reçues grâce à 15 clichés inédits sur la biodiversité.

La fête des jardins

Les jardins de Paris sont en fête le samedi 26 et le dimanche 27 septembre 2009.

Pour la 13e édition de la Fête des jardins, des animations gratuites sont organisées dans les 20 arrondissements de la capitale et cinq villes de la première couronne, durant tout le week-end. En effet, Puteaux, Montreuil-sous-bois, Aubervilliers, Saint- Mandé et Clichy-la-Garenne participent pour la première fois à la Fête des jardins et vous invitent à partir à la découverte du Grand Paris.

Un programme d’animations riche et varié vous attend au parc de Bercy et dans une centaine de jardins. De nombreuses activités ludiques, des jeux, des découvertes, des cours, des démonstrations, des promenades, ..., et sous le soleil !

Paris proposera aussi des démonstrations de bûcherons élagueurs dans les arbres (Bercy, Monceau, Montsouris, Buttes-Chaumont, école Du Breuil), des techniques de rempotage et des spectacles.

L’expo photo

Dans le cadre de son parcours artistique Naturel brut, le WWF-France a sollicité GOBELINS, l’école de l’image pour montrer la biodiversité autrement.

Donner de la visibilité à des artistes en herbe tout en les sensibilisant à la problématique de l’érosion de la biodiversité, telle était l’ambition de ce partenariat inédit.

Ce sont les étudiants en photographie (options prise de vue / post-production photographique) de la promotion 2011 qui ont répondu à l’appel. Après avoir été sensibilisés à la problématique de la disparition des espèces par l’équipe du WWF, ils ont reçu la consigne de traiter le sujet de façon personnelle en proposant un regard nouveau sur la biodiversité.

Leurs quinze photographies nous confrontent à nos propres contradictions, entre l’envie d’une cohabitation pacifique avec la nature et notre obstination à la maltraiter.

Évoquant tour à tour les relations ambigües que nous entretenons avec l’environnement, les services rendus par la nature et la biodiversité en péril, leurs images surprennent, amusent ou effraient et en tout cas, nous interpellent.

GOBELINS, l’école de l’image (www.gobelins.fr) - Acteur de référence dans les formations aux métiers de l’image, GOBELINS, l’école de l’image est l’une des 11 écoles de la Chambre de commerce et d’industrie de Paris (CCIP). Elle accueille chaque année plus de 700 élèves et apprentis et 1 400 stagiaires en formation continue dans les domaines suivants : multimédia, cinéma d’animation, communication et industries graphiques, photographie, vidéo & son. 86 % des diplômés de l’école trouvent un emploi dans les 6 mois qui suivent leur remise de diplôme. L’activité formation continue de l’école est certifiée ISO 9001.

Plus d’infos sur www.naturel -brut .fr

Mathilde Valingot

jeudi, août 12 2010

Gorilla goes ape over Nintendo DSi XL

Boy drops Nintendo game machine into gorilla enclosure. Gorillas approve

http://www.msnbc.msn.com/id/38628495/ns/technology_and_science-games/

mercredi, juillet 28 2010

My boyfriend thinks I talk too much

From Sarah, by email Dear Carole, Please can you help me with an embarrassing problem which I can't seem to control that annoys my boyfriend (and my previous one too).

I'm in love with him, and he with me; we've been together for four years. But I talk more than him and can't seem to stop myself, especially when I'm excited or happy, when he's just trying to quietly enjoy the moment.

It doesn't help that he's Hungarian. I have learned a few basics of his native language, but am nowhere near fluent and can't hold a conversation in Hungarian.

Do you have any advice to help me control my talking when I'm excited or happy?

Carole replies: Evolutionary theorists have argued that the evolution of female sociability is linked to the development of the primate neocortex.1 This is the part of the brain responsible for language, sensory perception and self-awareness, among other cognitive abilities. (Neocortical abnormality is associated with autism and impaired communication skills.) The neocortex is proportionally larger in primates than in other mammals, larger in the apes than in monkeys and significantly bigger in humans.2

In addition, information transfer points between the brain's two hemispheres are larger in human females, thus facilitating rapid inter-hemispheric processing of linguistic and empathic information.3

It is thought that social evolution in primates has been female-driven and that females are selected for group co-operation.4 The idea is that those of our female primate ancestors who were communicative and co-operative breeders left behind higher numbers of descendants than those who did not communicate and co-operate.5

By around six months human infants start to babble and, depending on the sociability of the individual, this spontaneous chattiness may continue into adulthood. This is more likely to happen in females than males. Innate sex differences in brain architecture may give females the edge in social communication, though the difference is unrelated to measures of general social intelligence.

All of this research indicates that you, Sarah, and your ancestors have evolved to be chatty, babbling females. When primates become excited their vocalisations increase and you are no different. When you are in the company of like-minded female friends that isn't a problem. You can talk as much as you want, jump backwards and forwards between themes and sub-themes, and concurrently narrate multiple storylines. Your friends will happily reciprocate and no one will lose the plot.

But your hard-wired chattiness annoys the men in your life – men not hard-wired for empathic chattiness. You have reached a point now where you want to please your partner by controlling your spontaneous vocalisations. You are willing and perhaps able to adapt to his requirement for silence.

But here's your dilemma.

Many female primates only commune with males during sex, the rest of the time being spent in the company of females and infants. Males are often found sitting alone. By contrast, humans have developed a monogamous culture in which males and females spend social time together. Frequently men wish the females in their lives behaved more like males and women wish the men in their lives could get in touch with their feminine side.

Your personality type is most probably more socially flexible than your partner's, so it may be easier for you to quieten down than for your partner to reciprocate your need for constant chatter.

But at what cost? For an evolved, advanced social animal to deny this large part of herrself and metaphorically gag herself could lead to depression. Empathic humans have an innate requirement for companionship, shared experience and to listen and explore all points of view.6 It is a therapeutic necessity for babbling humans to be able to exchange chatter, and to analyse the crucial information held therein, rather than to experience emotional highs and lows in isolation.

As you are in love with your current boyfriend, however, you will not want to find a new, chattier male. Perhaps, instead, when you cannot be in the physical company of girlfriends you could simply phone or message them? That way you could continue to live out your excited, babbling happiness and your desire to share that happiness with others without irritating your partner.

You might also try purging your excited thoughts by writing them down.

Just don't forget that you have a duty to know your evolved self and keep yourself happy.

Baboons listen for car alarms

Baboons on the Cape Peninsula have long known how to open the doors of tourists' cars in search of food. But now they listen for the "tweet tweet" of remote door locking before deciding whether to bother, a Cape Town city official says.

The city's manager for destination development Theuns Vivian was speaking following a media briefing at which he said the municipality was trying to get national government to approve an official baboon warning sign.

"People stop their vehicles, and the vehicles get damaged," he said.

"Or they get out of their vehicles, and these baboons are highly intelligent animals. They're waiting for the sound of the car alarm.

"If they don't hear the 'tweet tweet' they make for the door.

"So the tourists get out of the vehicle, they stand amazed at the vista and the view, and the baboons go for the door, and say, 'well, that door's not locked'.

"They are so intelligent: they wait for the noise of the alarm system. So we need to educate our tourists."

Vivian said the city had asked the national department of transport to add a baboon warning sign to its menagerie of official road signs.

He said the city wanted a triangle with a red rim carrying a picture of a baboon, similar to those showing kudu, elephant, warthog and hippo.

"We're making proposals to national government to include it in the road ordinances so that we can warn people when there are baboons crossing the road... or in the area," he said.

"And also to ask people to act responsibly.

"We've put up other signs to warn them that these are dangerous animals, and you still have people trying to pose for a photograph next to a baboon with fangs the size of a cheetah's." Cars and robbers

There had been complaints about drivers speeding through troops of baboons.

Baboons also got into cars and 'stole' food, cameras and other valuables.

Vivian said that currently the only warning triangle the city could put up was one carrying an exclamation mark, and the word "baboons" underneath it.

Existing green-and-white "informative" signs warning people abut baboons were not enough.

These could by law be set up only some distance from the road edge, where they did not obstruct the view or the driver's attention.

The council wanted the warnings as a road sign, on the verge of the road.

He said Cape Town was trying to educate tourists about baboons both through signage, and through "dos and don'ts" included on maps and in visitor guides.

"We value our baboons, and we value our tourists. We'd like to have a nice symbiosis."

Environmentalists say the territory available to baboons on the peninsula has shrunk with the expansion of the urban edge.

Residents of some suburbs regularly report incursions of the primates into built-up areas.

Mama wannabe monkey adopts baby of another species

A childless female monkey has found a way to satiate her maternal drive adopt a baby from another species, zookeepers report today.

The mother, a golden-headed lion tamarin named Maternal Juanita, lives at the ZSL London Zoo. She took a liking to her neighbor's baby an emperor tamarin just weeks after it was born.

Now the surrogate mum can be seen jumping around zoo exhibits with the 2-month-old baby on her back. The emperor tamarin's grey body and white moustache stand out against its "mother's" fiery orange mane. The baby tamarin is already showing signs of an adult's signature white moustache. In fact, the animals are thought to have been named after the Emperor of Germany, Emperor Wilhelm II, due to their long, white moustaches.

"Juanita has never had a baby before so it seems like her mothering instinct has just kicked in this time around," said Lucy Hawley, a senior zookeeper at the zoo. "Who knows what animal she'll be carrying around next?"

Emperor tamarins, native to South America, are usually raised by their fathers who carry them until they are old enough to fend for themselves.

Despite the monkey mix-up, there does not seem to be any hard feelings between Juanita and her neighbor the biological parent of the emperor tamarin.

"At first the father of the emperor tamarin baby was a little nervous about Juanita but now they all seem to get along just fine," Hawley said.

lundi, juillet 19 2010

Workshop Capture-Recapture

Montpellier Workshop | State uncertainty | 15-19 November 2010

Upcoming workshop on the analysis of capture-recapture data using multievent models to be held at Center for Evolutionary and Functional Ecology (CEFE), Montpellier, France, 15-19 November 2010. The registration of participants will be at CEFE the 15 November on evening and will be followed by 3 days of lessons and one day of practical work on the participants’ data.

See http://www.cefe.cnrs.fr/biom/Workshops/Default.htm for more details.

———–

The estimation of population parameters (survival, recruitment, dispersal, and population growth rate) is critical to many areas of fundamental and applied biology. The major source of data for such estimation comes from observations of marked animals. This workshop will deal with recent advances in the analysis of such data. The content is aimed at providing the participants with a solid background in the philosophy, theory and practices for the analysis of data from marked animals, with a specific focus on multievent data and models. Multievent capture-recapture models are a natural generalization of the multisite recapture models. Similarly, individuals are sampled on discrete occasions, at which they may be captured or not. However, contrary to the multisite case, uncertainty in the assessment of state such as breeder, diseased or highly catchable can be incorporated into the analysis. Conceptually, it is not states that are observed but rather something dubbed an « event » (a particular breeding behaviour, a positive blood test or just encounter), which reflects to some extent the underlying state. The presence of imperfect observations and the lack of information on individual quality presently make multievent models an invaluable tool in virtually any area of population biology. Current applications include the study of dispersal, epidemiology, individual heterogeneity, mixture of information… New developments allow the treatment of individual heterogeneity through random effects as well as through mixture models, and the inclusion of individual as well as environmental covariates. For examples of topics that can be addressed in the multievent framework, see the non-exhaustive bibliography below. Emphasis will be placed on stringent procedures for building and selecting the most appropriate models for the data set at hand, in order to be able to draw reliable biological conclusions.

Teachers: Roger Pradel, Olivier Gimenez, Emmanuelle Cam, Ana Sanz-Aguilar, Rémi Choquet.

jeudi, juillet 15 2010

ECCS'10 CHALLENGE http://eccs2010.eu/challenge

It is second time that the ECCS challenge is taking place, so let us start a tradition! The objective of the ECCS Challenge is to be the most imaginative that you can, applying what ever knowledge you have in the field of complexity sciences, to tell us something insightful about the data we provide you. Be delighted in having an intimate understanding of the internal workings of systems presented (compare RFC1392 :-)! What for?

Besides of all the fame the delighted winner obtains a free registration for the Vienna ECCS'11 conference plus travel support of up to 500€. What to do?



====================================================================

The challenge this year consists of three undirected real-world networks with more or less encrypted labels, but we do not tell you what they represent.

Here are some questions to inspire you:

   * What do the networks have in common?
   * Which natural grouping of nodes would you suggest and why?
   * What is your favorite representation for the three networks?
   * Which results do you obtain using your own complex system's
     toolbox?
   * As add-on: Can you give a nickname for each network?

But be aware that you might also be nominated for an antiECCSaward for the worst "ridiculogram" (how Mark Newman coins the indiscriminate use of obfuscating network diagrams).

We are really looking forward to your contributions. In case it is too easy for you, do not hesitate to ask for another two networks.

====================================================================

Download the Datasets at ECCS'10 Challenge page

http://eccs2010.eu/challenge

====================================================================

Enter the Challenge

To enter the challenge you need to be at ECCS'10 in September. Only attendants of the conference can enter (although not all team members need to be registered). During September submissions should be sent by email to challenge@eccs2010.eu

Your submission should consist of a 3 page document (PDF) with the description of your findings and also a PDF/powerpoint/keynote presentation (5 slides max) with your findings. You'll have to present your findings during the conference.

Please, don't submit early. Early submissions will be rejected. Submissions will be open from September 1 to September 15. Winners will be announced during the last day of the conference.

Good luck

                  -- The ECCS'10 Challenge Team

====================================================================

-- http://cssociety.org/

Miss Cellania Ape Women: 10 Dedicated Primate Researchers

Women are doing amazing work in primatology, the study of monkeys, apes, prosimians, and even humans. Although many are working on furthering our understanding of our closest relatives, we will take a look at only the most prominent.

http://www.mentalfloss.com/blogs/archives/59996

Hormone study finds monkeys in long-term relationship look strangely human

July 12, 2010

by David Tenenbaum

Monkeys in enduring relationships show a surprising correspondence in their levels of oxytocin, a key behavioral hormone, according to research published online June 28 in the journal Hormones and Behavior.

While measuring oxytocin in the urine of 14 pairs of cotton-top tamarins, Charles Snowdon, a University of Wisconsin-Madison professor of psychology, observed a wide range of hormone levels.

But he also saw a striking correspondence among the couples: When one mate had a high level of oxytocin, so did the other, and vice versa.

Furthermore, partners with a high level of oxytocin performed correspondingly more cuddling, grooming and sex, while those with low levels of oxytocin spent less time on these relationship-building activities.

The hormone oxytocin was originally studied for its role during childbirth, when it helps cement the mother-child emotional attachment. More recently, it has been linked to many other attachments. "Only in the past 20 years have we started to think more broadly about oxytocin's social function in forming and maintaining long-term relationships," says Snowdon.

In monogamous mammal species, he says, "We see that oxytocin in parts of the brain in females leads to pair-bonding." An oxytocin nasal spray makes people more willing to trust strangers. Oxytocin rises after orgasm, massage and petting. "All this together suggests that oxytocin would play some role in creating strong pair bonds in these cotton-top tamarins, who are socially monogamous," says Snowdon, "and that the amount of cuddling, grooming, stroking and sex might be related directly to the oxytocin level."

In the new study, Snowdon, Toni Ziegler, a scientist at the Wisconsin National Primate Research Center, and their collaborators measured urine samples for oxytocin and recorded behavioral activity three times a week for three weeks, and then noticed the surprising correspondence between both members of the pairs.

Predictably, the study showed that high oxytocin among females was associated with more cuddling and stroking, and that among males, the major element was the amount of sex.

Snowdon may have been the first to respond "Isn't that familiar!" to this part of the results: It doesn't take a high-tech lab to notice that women and men have different emotional and physical needs, and the monkeys seem to echo this need.

But he noticed something else: The high-oxytocin monkeys seem to know how to soothe their partners. In previous studies, after monkey pairs were mildly disturbed either by removing one animal for a half hour or by introducing the scent of another female, both partners increased cuddling and sex as though to mend the relationship.

In the current study, the partners seem to know what the other partner needed. "Males in a high-oxytocin relationship were more likely to initiate cuddling, and females were more likely to initiate sex," Snowdon says. "These males were initiating the behavior that the female needed for high oxytocin, and the females with high oxytocin were initiating the behavior that male partner needed for high oxytocin."

Snowdon says this "monkey version of 'kiss and make up' suggests that sex and affiliative behavior may play an important role in maintaining a relationship."

Stroking, sex and cuddling are critical parts of what it means to be a cotton-top tamarin, and to be human, Snowdon says. "Here we have a nonhuman primate model that has to solve the same problems that we do: to stay together and maintain a monogamous relationship, to rear children, and oxytocin may be a mechanism they use to maintain the relationship. Therapeutically, I'd suggest this would have relevance to human couples." Share this story:

lundi, juillet 12 2010

Dossier de l’Académie des sciences sur la biodiversité Par admin

En cette Année internationale de la biodiversité et à l’approche des conférences mondiales organisées par les Nations Unies à l’automne 2010, l’Académie des sciences présente une deuxième série de Libres points de vue d’Académiciens, intitulée « Libres points de vue d’Académiciens sur la biodiversité ».

« Libres points de vue d’Académiciens sur la biodiversité » (108 pages) est accessible :

par la rubrique : http://www.academie-sciences.fr/publications/librepropos.htm

ou directement : http://www.academie-sciences.fr/actualites/textes/points_vue_07_07_10.pdf

vendredi, juillet 2 2010

BBC - Earth News - Robofish accepted by wild fish shoal

Robofish mark 1 makes the news:

http://news.bbc.co.uk/earth/hi/earth_news/newsid_8772000/8772020.stm

mercredi, juin 16 2010

Et vous, vous faites quoi avec 5 centimes ?

http://www.youtube.com/watch?v=eV-J5yl82p8

CarteAgir — 16 février 2010 — Pour chaque visionnage de cette vidéo, 5 centimes d'euro seront reversés aux associations partenaires : Action contre la faim, Aide et action, Aides, Fondation énergies pour le monde, France nature environnement, Médecins du monde, SOS Villages d'enfants, Surfrider, Terre et humanisme, l'UNAPEI.

http://www.youtube.com/CarteAgir

Crédit Coopératif - Carte Agir Catégorie : Associations et organismes Tags : Carte Agir Crédit Coopératif Association Don Centimes Collectif Responsable Solidaire Humanitaire Euros Action contre la faim Aide et action Aides France nature environnement Médecins du monde SOS Villages d'enfants Surfrider Terre humanisme UNAPEI

lundi, juin 7 2010

Un monde vivant, histoires de biodiversité - Podcast CNRS

CNRS Images, en partenariat avec TF1 News, vous donne rendez-vous du 1er au 25 juin 2010, tous les jours du lundi au vendredi, pour découvrir en images 4 grandes notions de la biodiversité : la définition, la valeur, l’extinction, la conservation. Comment ? En regardant en streaming ou en baladodiffusion, un nouvel épisode de 3 minutes tiré de leur collection de podcast vidéo "Un monde vivant, histoires de biodiversité".

vendredi, mai 21 2010

Scientists discover the molecular heart of collective behavior

by Kitta MacPherson

Birds flock. Fish gather in schools. Bees swarm. Even amoebae clump together in mystifyingly clever constellations.

Scientists have long wondered what is happening at the cellular and molecular level to bring about this amazing coordination of so many individual animals, insects and organisms into groups. It's a choreography seen throughout nature from the large-scale to the miniscule, with synchronized movements as precise as the dance lineup of a Broadway musical.

Is there a secret drum major, a leader among the group setting the pace and instigating participation? Or is it that organisms and cells already are moving rhythmically but independently and then find themselves provoked into harmony by an external beat?

A group of scientists seeking the answer to the mystery of collective motion has found strong evidence pointing to a third possibility -- collective behavior can arise in cells that initially may not be moving at all, but are prodded into action by an external agent such as a chemical. Research led by Thomas Gregor, an assistant professor of physics at Princeton, and Satoshi Sawai, a former postdoctoral fellow in the laboratory of Princeton biologist Edward Cox and now at the University of Tokyo, has shown that food-deprived amoebae are prodded into their coordinated clumping by the chemical cyclic adenosine monophosphate (cAMP), effectively changing the parameters of the cell environment.

The chemical is ubiquitous in nature, aiding signaling within living cells and regulating activities like protein production. John Bonner, Princeton's George M. Moffett Professor Emeritus of Biology, put the substance on the map for amoebae in 1967. He showed with his collaborators that certain cells are drawn to cAMP, and provided through a series of experiments one of the clearest demonstrations of chemotaxis the movement by a cell or organism toward a chemical stimulus ever shown.

Gregor said his team's recent findings could have implications for collective behavior beyond amoebae, such as processes in humans ranging from white blood cells that swarm in the lymph nodes to the step-by-step development of cells into organs.

Writing in a paper to appear in the May 21 issue of Science, the researchers were able to measure concentrations of the chemical and mark its effects for the first time as it arose in single living cells and clusters of cells in Dictyostelium, a slime mold. When the amount of the chemical surrounding an individual cell reaches a certain critical level, the scientists found, the cell starts to pulse rhythmically, firing off more chemicals into the surrounding area that prompt other cells to pulse, an effect that cascades through the population. Ultimately, the cells grow in sync with each other and eventually move together as a massive group.

"This is the first time in biology that such a mechanism could be shown both at the single cell and at the cell population level simultaneously," said Gregor, the first author on the paper. Gregor, who also is a member of Princeton's Lewis-Sigler Institute for Integrative Genomics, joined the University faculty in February 2009 after working with Sawai at the University of Tokyo.

Cox, the Edwin Grant Conklin Professor of Biology at Princeton and a pioneer in the study of cell signaling, said, "To my way of thinking, this is one of the major advances in the field in the past many years."

Learning whether a signal exists to provoke collective motion, he said, is similar to knowing what signals are conveyed to cells so that they become specialized units such as hearts and kidneys. The current work by Gregor, Sawai and others on the paper can lead to better understanding of what drives groups of cells to perform specific behaviors, Cox said.

While instances of collective motion can be seen throughout nature, Gregor favors studying the social amoebae Dictyostelium. The group behavior exhibited by these creatures has long fascinated scientists. As individual cells of Dictyostelium divide in two, their population doubles in a few hours. Once they have consumed all of their favorite food all the bacteria in the vicinity they will begin to gather at a central collection point. So many come together that the clumped cells become visible to the naked eye. This accumulation serves as an alternative survival strategy for the starving cells: Many of the cells end up turning into spore cells that will endure the starvation period.

In the experiments, the team used an optical sensor to detect the levels of cAMP in individual amoeba cells. The sensor is able to change color between bright blue and yellow for high and low cAMP concentrations, respectively. Using this sensor in combination with high-powered microscopes, populations of cells can be individually tracked and their internal cAMP concentrations can be monitored simultaneously. This system allowed the researchers to see for the first time in real time the onset of the collective behaviors that lead the cell population to aggregate, and to link these behaviors directly to the molecular level of the cell's signaling mechanisms.

A biophysicist, Gregor wants to discover the basic physical principles that govern the existence of multicellular life. This can include anything, he said, from the collective behavior of soil-dwelling amoebae to the development of the human embryo after the moment of conception. He believes that experiments that can directly study these complex life processes should become an integral part of any modern physics curriculum.

In the experiments reported in Science, the team used an optical sensor to detect the levels of cAMP in individual amoeba. The sensor is able to change color between bright blue and yellow for high and low cAMP concentrations, respectively. Using this sensor in combination with high-powered microscopes, populations of cells can be individually tracked and their internal cAMP concentrations can be monitored simultaneously. This system allowed the researchers to see for the first time in real time the onset of the collective behaviors that lead the cell population to aggregate, and to link these behaviors directly to the molecular level of the cell's signaling mechanisms.

A biophysicist who earned his Ph.D. from Princeton in 2005, Gregor wants to discover the basic physical principles that govern the existence of multicellular life. This can include anything, he said, from the collective behavior of soil-dwelling amoebae to the development of the human embryo after the moment of conception. He believes that experiments that can directly study these complex life processes should become an integral part of any modern physics curriculum.

In attempting to explore these issues, he has built state-of-the-art microscopes and microfluidics devices, which detect and measure microscopic levels of chemicals within cells, both in cellular colonies and in embryos. His work is also steeped in the theoretical, allowing him to design analytical and numerical models to test and guide his experiments.

Many studies, he said, focus on either the behavior of single cells or on the global properties of populations, rather than focusing on interactions. "It is increasingly clear that cells within organisms behave collectively," Gregor said. "It is therefore no longer enough to understand how single cells behave. Instead, we must identify their collective interactions and their signaling mechanisms at a systems level."

On the one hand, scientists need to understand how cooperative properties exhibited by groups differ from single-cell characteristics, he explained. On the other hand, researchers also need to know how actions within single cells generate communal behavior.

"To address this problem, there is a critical need to simultaneously observe the behaviors of individual cells, the behavior of the population as a whole, and to measure the relevant signaling interactions," Gregor said.

The work was supported by a Japan Science and Technology Agency project on complex systems biology led by Kunihiko Kaneko, a physicist at the University of Tokyo. Gregor's work at the University of Tokyo was funded by a two-year postdoctoral fellowship from the Japan Society for the Promotion of Science.

2011 IEEE Symposium on Swarm Intelligence

Written by Simon Garnier on May 20, 2010 – 11:11 am

The 2011 IEEE Swarm Intelligence Symposium (SIS2011) will be held in Paris, France, April 11 – 15, 2011. It will be part of the IEEE Symposium Series on Computational Intelligence 2011. The aim of the SIS2011 is to provide a platform for researchers, academicians, students, engineers, and government officers from all over the world to share and exchange information in the swarm intelligence research areas ranging from algorithm development to real-world applications. Authors are invited to submit their original and unpublished work related to swarm intelligence, including research, theory, development, and applications.

jeudi, mai 13 2010

J'agis pour la nature

http://www.jagispourlanature.com/

La Fondation Nicolas Hulot et l’association A Pas de Loup vous proposent d’agir sur le terrain, pour la biodiversité, en devenant écovolontaire. Accueil et soins à des animaux, suivi et protection d’espèces, entretien d’espaces naturels, écoconstruction... Les activités sont variées et s'adressent à tous, sans compétences particulières. Sur cette plateforme, vous trouverez les propositions d’actions de 20 professionnels de la nature. Il y en a sûrement une qui vous correspond : ne perdez pas une seconde !

mercredi, mai 12 2010

SIMAI 2010: Young researcher symposium on crowds and swarm dynamics

Written by Simon Garnier on March 15, 2010 – 7:41 pm

During the next SIMAI biannual congress (SIMAI 2010), Dr. Andrea Tosin (Department of Mathematics, Politecnico di Torino) and Dr. Paolo Frasca (Istituto per le Applicazioni del Calcolo) are organizing a symposium on crowds and swarm dynamics. The participation (as speaker) of this symposium is reserved to young, not tenured researchers. This symposium aims at bringing together young researchers active in the field. In accordance with the multi-disciplinary nature of the topic, the invited speakers have very different backgrounds: they are biologists, engineers, mathematicians.

The SIMAI congress will held in Cagliari (Italy), from June 21st to June 25th 2010. The exact date of the symposium during this period is not yet decided. Expected speakers are:

   * José Alfredo Cañizo (Department of Mathematics, Universitat Autònoma de Barcelona, Spain): Mean-field limit for collective behavior models with noise.
   * Emiliano Cristiani (CEMSAC – Università di Salerno and IAC-CNR, Roma, Italy): A multiscale approach for pedestrian flow.
   * Jesú Rosado (Department of Mathematics, Universitat Autònoma de Barcelona, Spain): A refined result of flocking for the Cucker-Smale model.
   * Juliette Venel (Department of Mathematics, Université de Valenciennes et du Hainaut-Cambrésis, France): A discrete contact model for crowd motion.
   * Fiammetta Venuti (Department of Structural and Geotechnical Engineering, Politecnico di Torino, Italy): Crowd-structure interaction on footbridges, modelling of the coupled system and an application.
   * And me, Simon Garnier (Department of Ecology and Evolutionary Biology, Princeton University, USA): Trail geometry encodes heuristic information in the Argentine ant.

Workshop – Modeling complex dynamics in biological systems

Written by Simon Garnier on May 11, 2010 – 5:51 pm

On June 7-9, 2010, the MIBS project (Modeling and Information Processing for Systems Biology) organizes a workshop on "Modeling complex dynamics in biological systems". MIBS is an interdisciplinary project involving all academic and research institutions of the Toulouse area (France), with the goal of promoting and developing a strong and wide expertise on systems biology in Toulouse.

Systems biology aims at understanding how biological systems operate at various scales, by studying the interactions between the individual constituents (genes, proteins, cells, organisms). At each of these organisational levels, the degree of complexity is such that information cannot be processed and integrated on a purely intuitive basis. For this reason, mathematical models play an increasingly important role. Such models must be elaborated on the bases of biological data and validated at both the elementary constituent and the global structure scales. Nowadays, the development of statistical analysis and mathematical modeling tools leads to the possibility of 'in silico' simulations of the various processes which underlie the operation of the biological systems at the various scales.

The use of these methods and the new investigation areas that they open are constantly growing. The goal of this workshop is to gather experts of this new interdisciplinary research field in an attempt to draw a sketch of the state-of-the-art and to spread the methodologies to a wide community of researchers.

The workshop will consist of plenary talks of 45 minutes each plus 15 minutes for questions. The schedule will leave time slots for discussions and interactions among the participants. The participation to the workshop is free of charge, but registration in mandatory.

The workshop will be followed by a one-day companion workshop, 'Mathematics of Complex Systems', on Thursday June 10, 2010.

All necessary information to attend the workshop are available at this address: http://sites.google.com/site/mibs3toulouse/workshops.

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